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ddbtp datp mix  (Jena Bioscience)


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    Structured Review

    Jena Bioscience ddbtp datp mix
    Ddbtp Datp Mix, supplied by Jena Bioscience, used in various techniques. Bioz Stars score: 94/100, based on 10 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ddntp+mix/ddNTP+Bundle/pm42716011-778-35-46
    Average 94 stars, based on 10 article reviews
    ddbtp datp mix - by Bioz Stars, 2026-10
    94/100 stars

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    other:

    Article Title: Click-chemistry-aided quantitation and sequencing of oxidized guanines and apurinic sites uncovers their transcription-linked strand bias in human cells
    Article Snippet: For ddNTP blocking, gDNA was first incubated with 1 μL ENDOIV (NEB, 10 U/μL) in 1x ThermoPol Buffer (NEB) in a final volume of 20 μL for 20 min at 37°C.

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome
    Article Snippet: The plasmid pEGFP-W (ref. ), derived from pEGFP-N1 (Addgene, 6085-1), was purified from BL21(DE3) Escherichia coli (NEB, C2527H) using a Qiagen plasmid maxi prep kit (Qiagen, 12162) and digested with BamHI-HF (NEB, R3136S) and HindIII-HF (NEB, R3104S) restriction enzymes, generating sticky ends for subsequent ligation.

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome.
    Article Snippet: Specifically, 20 U of each enzyme was added to 5 μg of the plasmid along with 5 μl of 10× rCutsmart buffer (NEB, B6004S) in a final volume of 50 μl, followed by incubation for 1 h at 37 °C.

    Incubation:

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome.
    Article Snippet: For ddNTP blocking, gDNA was first incubated with 1 μl of ENDOIV (NEB, M0304L) in 1× ThermoPol buffer (NEB, B9004S) in a final volume of 20 μl for 20 min at 37 °C. .. Then, 2.5 μl of ddNTP mix ( Jena Biosciences, NU-1019S), 0.5 μl of 10× ThermoPol buffer (NEB, B9004S), 1.8 μl of H2O and 0.2 μl of Therminator IX (NEB (custom synthesis) 10 U per μl) was added, followed by a 10-min incubation at 60 °C. .. gDNA was extracted from cell pellets using the Monarch gDNA extraction kit (NEB, T3010L), following the manufacturer’s instructions.

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome.
    Article Snippet: Undesired background modifications were blocked by adding 1 μl of ENDOIV (NEB, M0304L) and 500 μM 8-HQ to 5 μg of gDNA, freshly extracted from HAP1 pellets, in 1× ThermoPol buffer (NEB, B9004S) in a final volume of 20 μl, and incubating the mixture for 20 min at 37 °C. .. Then, 2.5 μl of ddNTP mix ( Jena Biosciences, NU-1019S2.5 mM), 0.5 μl of 10× ThermoPol Buffer (NEB, B9004S), 1.8 μl of 8-HQ (500 μM) and 0.2 μl of Therminator IX (NEB (Custom synthesis), 10 U per μl) were added, followed by a 10-min incubation at 60 °C. .. Next, 25 μl of 8-HQ (500 μM) and 80 μl of Pronex beads (Promega, NG2002) were added for purification with an elution volume of 25 μl.

    Article Title: Click-chemistry-aided quantitation and sequencing of oxidized guanines and apurinic sites uncovers their transcription-linked strand bias in human cells
    Article Snippet: Undesired background modifications were blocked by adding 1 μL ENDOIV (NEB, 10 U/μL) and 500 μM 8-HQ to 5 μg of gDNA, freshly extracted from HAP1 pellets, in 1x ThermoPol Buffer (NEB) in a final volume of 20 μL, and incubating the mixture for 20 min at 37°C. .. 2.5 μL ddNTP mix (Jena Biosciences, 2.5 mM), 0.5 μL 10x ThermoPol Buffer, 1.8 μL of 8-HQ (500 μM) and 0.2 μL Therminator IX (NEB, 10 U/μL) were added, followed by a 10 min incubation at 60°C. .. In case of endogenous-DNA-oxidation mapping, gDNA was eluted in H2O supplemented with 500 μM 8-hydroxyquinoline (HQ; Sigma) after extraction and purification.

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome
    Article Snippet: Fluorescence was recorded with an Infinite Pro M200 plate reader (Tecan) using the following settings: λ Ex = 580 nm, λ Em = 610 nm, gain = optimal, 25 flashes, 20 μs of integration time and 25 °C. .. Then, 2.5 μl of ddNTP mix (Jena Biosciences, NU-1019S2.5 mM), 0.5 μl of 10× ThermoPol Buffer (NEB, B9004S), 1.8 μl of 8-HQ (500 μM) and 0.2 μl of Therminator IX (NEB (Custom synthesis), 10 U per μl) were added, followed by a 10-min incubation at 60 °C. .. Next, 25 μl of 8-HQ (500 μM) and 80 μl of Pronex beads (Promega, NG2002) were added for purification with an elution volume of 25 μl.

    Article Title: Click-code-seq reveals strand biases of DNA oxidation and depurination in human genome
    Article Snippet: For ddNTP blocking, gDNA was first incubated with 1 μl of ENDOIV (NEB, M0304L) in 1× ThermoPol buffer (NEB, B9004S) in a final volume of 20 μl for 20 min at 37 °C. .. Then, 2.5 μl of ddNTP mix (Jena Biosciences, NU-1019S), 0.5 μl of 10× ThermoPol buffer (NEB, B9004S), 1.8 μl of H 2 O and 0.2 μl of Therminator IX (NEB (custom synthesis) 10 U per μl) was added, followed by a 10-min incubation at 60 °C. .. The repair mix modified from Zatopek et al. comprised gDNA with 1 mM NAD + (NEB, B9007S), 1 μl of dNTP mix (NEB, N0447S), 1 μl of ENDOIV (NEB, M0304L), 5 μl of TAQ ligase (NEB, M0208S), 0.5 μl of BST DNA polymerase FL (NEB, M0328S) and 2 μl of 10× ThermoPol buffer (NEB, B9004S) in a total volume of 20 μl and was incubated for 30 min or overnight at 37 °C.



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